FRUITBREEDOMICS

 
 
 
 
 
 
The Project Activities WP7-Tools and data management
 
 

The FruitBreed DB model will provide a unique tool specifically adapted for geneticists and breeders working mainly on apple and peach, especially when the aim is to combine phenotypic and molecular marker data. It will support Pedigree Genotyping, LD association mapping, marker-assisted breeding. This database will be useful in intercontinental collaboration on marker-trait associations, validation of candidate genes and functional allelic diversity. Its structure will form a firm foundation on which other users can build their own applications. In agreement with our US partners, already set framework of the US database GDR (Genome Database for Rosaceae will be used. It will be complemented and integrated with the structure and the functions developed for AppleBreed DB. New informatics tools will be developed that will operate on the integrated database such as a Breeding Information Management System (BIMS). It will be easily extended to include various crops, thus forming a base for a RosBREED DB. The new data coming from the project will be stored in this merged DB keeping however the breeding site separate and independent from GDR.

  • To manage the available and “to be produced” phenotypic data of apple and peach from the genetic materials present across EU from different locations
  • To develop and utilise tools to study model traits based on functional and structural genomics
  • To manage the available and “to be produced” genotypic data of apple and peach for
  • the development of a comprehensive platform including gene/QTL map position, gene ontology
  • To combine phenotypic and molecular marker data for PBA/LD/MBA analysis
  • To improve collaboration on apple/peach genome studies
  • To speed breeding procedures (synthesis of data to select parents; direct identification of elite individuals by markers, etc.).
 
 
 
 
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